Overview:

The applications described here were developed by the Data Visualization Center (DVC) portion of the KPMP project. We have developed a wide array of applications in order to support the gathering, dissemination and display of the data generated through this project. These pages will contain information about each of the projects as well as documentation for any developers who wish to make use of our works.

External Applications:

Application	Description
Participant Portal	Web portal for KPMP participants to view their biopsy results as whole slide images.
Atlas Repository	Allows researchers to download raw gene data generated from KPMP participant biopsies and reference tissue samples.
Atlas Explorer	Allows researchers to search for markers or cell types of interest and view summary data visualizations across the various KPMP 'omics' technologies.
Atlas Spatial Viewer	Allows researchers to view spatial data visualizations via the Vitessce spatial viewer.

Internal Applications:

Application	Description
Data Lake Uploader	Used by the entire consortium to store and share all of the raw and processed data that is being generated.
Digital Pathology Repository (DPR)	Web portal for browsing KPMP biopsy whole slide images, organized by case and slide properties.
Data Manager Dashboard	Application for KPMP Data Managers to review and curate data between the Data Lake and Knowledge Environment.

KPMP Publications

Name	Description
Cell-State-Atlas-2022	Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney
Reference Tissue Cell Atlas Manuscript 2022	Code and data for the manuscript entitled "A reference tissue atlas for the human kidney"